齐口裂腹鱼线粒体DNA控制区结构分析

首页 > 过刊浏览>2011年第46卷第2期 >97-101

齐口裂腹鱼线粒体DNA控制区结构分析
DOI:
                        
                    
作者:
                        谢佳燕谢佳燕
武汉工业学院 生物与制药工程学院 武汉 430023
在知网中查找
在百度中查找
在本站中查找

                    
作者单位:
作者简介:
通讯作者:
中图分类号:
基金项目:湖北省教育厅科学技术研究项目 (No.Q20081802), 武汉工业学院启动费资助项目;

Structure Analysis of mtDNA Control Region in Schizothorax prenanti

Author:

XIE Jia-Yan
XIE Jia-Yan
School of Biology and Pharmaceutical Engineering, Wuhan Polytechnic University, Wuhan 430023, China
在知网中查找
在百度中查找
在本站中查找

Affiliation:

Fund Project:

摘要

图/表

访问统计

参考文献 [25]

相似文献 [20]

引证文献

资源附件

文章评论

摘要:

利用直接测序法对齐口裂腹鱼(Schizothorax prenanti)线粒体DNA控制区进行了测序,并对其序列结构进行了分析。结果表明,齐口裂腹鱼线粒体控制区碱基组成中碱基A和T的含量明显高于G和C的含量,所有类型碱基组成中碱基G的含量最低,这与其他硬骨鱼类控制区碱基组成一致。通过与哺乳类和鲤形目鱼类控制区序列进行对比分析,在齐口裂腹鱼线粒体控制区中识别了相应的保守序列,包括终止相关序列、中央保守区的F、E、D、B盒,以及保守序列区的CSB1、CSB2、CSB3序列。

关键词:齐口裂腹鱼;线粒体控制区;保守序列

Abstract:

Mitochondrial DNA control region of Schizothorax prenanti was sequenced and analyzed by comparing with other species. The content of A and T in the control region of S.prenanti was higher than that of G and C. Compared with mammals and other species of Cypriniformes, several conserved sequence blocks were identified in the mitochondrial DNA control region of S.prenanti, including extended terminal associated sequences (ETAS), blocks of central domain (F, E, D, B-box) and conserved sequence block (CSB1-3).

Key words:Schizothorax prenanti;mtDNA control region;Conserved sequence

参考文献

[1] Saccone C, Pesole G, Sbisà E. The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. J Mol Evol, 1991, 33: 83-91.

[2] Sbisà E, Tanzariello F, Reyes A, et al. Mammalian mitochondrial D-loop region structural analysis: identifcation of new conserved sequences and their functional and evolutionary implications. Gene,1997, 205: 125-140.

[3] Randi E, Lucchini V. Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J Mol Evol, 1998, 47: 449-462.

[4] Larizza A, Pesole A, Reyes E, et al. Lineage specificity of the evolutionary dynamics of the mtDNA D-loop region in rodents. J Mol Evol, 2002, 54: 145-155.

[5] Iyengar A, Diniz F M, Gilbert T, et al. Structure and evolution of the mitochondrial control region in oryx. Molecular Phylogenetics and Evolution, 2006, 40: 305-314.

[6] Anderson S, De Bruijn, Coulson M H, et al. Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome. J Mol Biol, 1982, 156: 683-717.

[7] Doda J N, Wright C T, Clayton D A. Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. PNAS, 1981, 78: 6116-6120.

[8] Walberg M W, Clayton D A. Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res, 1981, 9: 5411-5421.

[9] Hoelzel R A, Lopez J V, Dover G, et al. Rapid evolution of a heteroplasmic repetitive sequences in the mitochondrial DNA control region of carnivores. J Mol Evol, 1994, 39: 191-199.

[10] Douzery E, Randi E. The mitochondrial control region of cervidae: evolutionary patterns and phylogenetic content. Mol Biol Evol, 1997, 14: 1154-1166.

[11] 武云飞, 吴翠珍. 青藏高原鱼类. 成都: 四川科学技术出版社, 1992.

[12] 陈毅峰,曹文宣. 裂腹鱼亚科//乐佩琦, 单乡红, 林人端,等. 中国动物志:硬骨鱼纲鲤形目下. 北京: 科学出版社, 2000: 273-390.

[13] 若木, 王鸿泰, 殷启云, 等. 齐口裂腹鱼人工繁殖的研究. 淡水渔业, 2001, 31(6): 3-5.

[14] 杜宗君. 齐口裂腹鱼人工养殖的生物学研究. 中国水产, 2003, 4: 81.

[15] Song Z, Song J, Yue B. Population genetic diversity of Prenant’s schizothoracin, Schizothorax prenanti, inferred from the mitochondrial DNA control region. Environmental Biology of Fishes, 2008, 81(3): 247-252.

[16] Liu H Z, Tzeng C S, Teng H Y. Sequence variations in the mitochondrial DNA control region and their implications for the phylogeny of the Cypriniformes. Can J Zool, 2002, 80: 569-581.

[17] 赵丽丽,赵金良,曹阳. 闽江和漓江暗鳜mtDNA 控制区序列差异分析. 动物学杂志, 2007, 42(1): 54-58.

[18] 萨姆布鲁克 J, 拉塞尔 D W:黄培堂等译. 分子克隆实验室指南. 3版. 北京: 科学出版社, 2002: 463-618.

[19] Thompson J D, Gibson T J, Plewniak F, et al. The Clustal X windows interface: flexible strategies for multiple sequences alignment aided by quality analysis tools. Nucleic Acids Res, 1997, 25: 4876-4882.

[20] Gouy M, Guindon S, Gascuel O. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol, 2010, 27(2): 221-224.

[21] Southern S O, Southern P J, Dizon A E. Molecular characterization of a cloned dolphin mitochondrial genome. J Mol Evol,1988, 28: 32-42.

[22] Lee W J, Conroy J, Howell H, et al. Structure and evolution of teleost mitochondrial control region. J Mol Evol, 1995, 41: 54-66.

[23] Excoffier L,Laval G, Schneider S. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 2005, 1: 47-50.

[24] Ruokonen M, Kvist L. Structure and evolution of the avian mitochondrial control region. Molecular Phylogenetics and Evolution, 2002, 23: 422-432.

[25] Saccone C, Attimonelli M, Sbisà E. Structural elements highly preserved during the evolution of the D-loop-containing region in vertebrate mitochondrial DNA. J Mol Evol, 1987, 26: 205-211.

引用本文

谢佳燕.2011.齐口裂腹鱼线粒体DNA控制区结构分析.动物学杂志,46(2):97-101.

复制

文章指标

点击次数:2553
下载次数: 2932
HTML阅读次数: 0
引用次数: 0

历史

收稿日期:2010-09-02
最后修改日期:2010-12-31
录用日期:
在线发布日期:
出版日期:

首页

关于本刊

编委会

作者指南

过刊浏览

期刊订阅

引用本文

文章指标

历史