红盲高原鳅线粒体基因组测定及其系统发育关系分析
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1.吉首大学生物资源与环境科学学院 吉首 416000;2.湖南壶瓶山国家级自然保护区管理局 石门 415300

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国家自然科学基金项目(No. 32160241),湖南省大学生创新创业训练计划项目(No. S202110531041),吉首市生物多样性资源调查项目,吉首峒河湿地保护与恢复监测项目;


Mitochondrial Genome and Phylogenetic Analysis of Triplophysa erythraea
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1.College of Biology and Environmental Sciences, Jishou University, Jishou 416000; 2.Hunan Hupingshan National Nature Reserve Administration, Shimen 415300, China

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    摘要:

    红盲高原鳅(Triplophysa erythraea Liu & Huang, 2019)是2019年发表的一种真洞穴鱼类,具有重要的洞穴生物学和进化生物学研究意义以及物种保护价值。2021年7月,在湖南省湘西土家族苗族自治州花垣县大龙洞采集到2尾样本。通过高通量测序技术对其中1尾的线粒体DNA序列进行分析,该线粒体DNA呈双链闭合环状结构,全长为16 585 bp,共含有37个基因,其中包括13个蛋白编码基因、22个tRNA基因和2个rRNA基因,以及两段非编码区,即L链复制起始区OL和H链复制起始区OH,碱基组成为A(31.2%)、G(15.8%)、C(26.0%)、T(27.0%),A + T的含量为58.2%。基于蛋白编码基因使用最大似然法和贝叶斯法构建高原鳅属系统进化树,确定了红盲高原鳅在进化树上的位置。本研究为高原鳅属鱼类的进化研究以及物种保护工作提供了基础数据。

    Abstract:

    [Objectives] Triplophysa erythraea, described in 2019, is a cave-dwelling fish. In July 2021, two samples of T. erythraea were collected from Dalong Cave, Huayuan County, Xiangxi Tujia and Miao Autonomous Prefecture, Hunan Province, China. The mitochondrial genome of this species was sequenced, assembled, and annotated to obtain sequence and phylogenetic information. [Methods] High-throughput sequencing technology was employed to obtain the complete sequence of the mitochondrial DNA. The assembly, annotation, and sequence analysis were performed, and a phylogenetic tree of the Triplophysa genus was constructed based on mitochondrial protein-coding genes using maximum likelihood and Bayesian methods. [Results] The results revealed that the mitochondrial genome is a double-stranded closed-ring structure with a total length of 16 585 bp, including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 2 non-coding regions (Fig. 1). The genome exhibited a significant AT bias (Table 2). In the phylogenetic tree, it formed a branch with T. rosa, T. nasobarbatula, and T. zhenfengensis (Fig. 2). [Conclusion] This study provides basic information on the mitochondrial genome of T. erythraea, reflects its position in the phylogenetic tree, contributes to understanding its evolutionary process, and provides clues for the conservation of this species.

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宋金津,宋爽,黄太福,刘航宇,刘志霄.2024.红盲高原鳅线粒体基因组测定及其系统发育关系分析.动物学杂志,59(4):588-596.

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  • 收稿日期:2023-08-28
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  • 在线发布日期: 2024-08-23
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